https://t-macnish.r-universe.devRecent package updates in t-macnishR-universehttps://github.com/t-macnish.pnghttps://t-macnish.r-universe.devMon, 21 Jul 2025 08:31:11 GMTtessa.macnish@research.uwa.edu.au (Tessa MacNish)A local haplotyping tool for use in trait association and trait prediction analyses pipelines. 'HaploVar' enables users take single nucleotide polymorphisms (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the output to be compatible with a wide range of trait association and trait prediction tools. The local haplotypes are calculated from the LD matrix using a clustering algorithm called density-based spatial clustering of applications with noise ('DBSCAN') (Ester et al., 1996) <ISBN: 1577350049>.https://github.com/r-universe/t-macnish/actions/runs/27683300308Mon, 21 Jul 2025 08:31:11 GMTHaploVar0.1.1successhttps://t-macnish.r-universe.devhttps://github.com/cran/HaploVarintroduction.Rmdintroduction.htmlintroduction2025-07-21 08:31:112025-07-21 08:31:11