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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HaploVar" in publications use:'
type: software
license: MIT
title: 'HaploVar: Defining Local Haplotype Variants for Use in Trait Association and
  Trait Prediction Analyses'
version: 0.1.1
doi: 10.32614/CRAN.package.HaploVar
abstract: 'A local haplotyping tool for use in trait association and trait prediction
  analyses pipelines. ''HaploVar'' enables users take single nucleotide polymorphisms
  (SNPs) (in VCF format) and a linkage disequilibrium (LD) matrix, calculate local
  haplotypes and format the output to be compatible with a wide range of trait association
  and trait prediction tools. The local haplotypes are calculated from the LD matrix
  using a clustering algorithm called density-based spatial clustering of applications
  with noise (''DBSCAN'') (Ester et al., 1996) <ISBN: 1577350049>.'
authors:
- family-names: MacNish
  given-names: Tessa
  email: tessa.macnish@research.uwa.edu.au
  orcid: https://orcid.org/0009-0008-8985-7348
repository: https://t-macnish.r-universe.dev
commit: 7402a12912cb4ebd15ba168e748b2eb3c1f30722
date-released: '2025-07-21'
contact:
- family-names: MacNish
  given-names: Tessa
  email: tessa.macnish@research.uwa.edu.au
  orcid: https://orcid.org/0009-0008-8985-7348